FastQCFastQC Report
Tue 28 Nov 2017
SRR491358_ccRCC.fastq.gz.fasta.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR491358_ccRCC.fastq.gz.fasta.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3719357
Sequences flagged as poor quality0
Sequence length35
%GC63

[WARN]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTTAGGT255.176022E-428.9812811
ACGCAAT255.176022E-428.9812811
TAACGCT255.176022E-428.9812811
TAGTTGT353.797286E-628.9812811
ACCTAAT502.4683686E-928.9812811
ATATAGT255.176022E-428.9812811
GCTTAGT502.4683686E-928.9812811
GTATACT353.797286E-628.9812811
GTATAAT255.176022E-428.9812811
CACACGT552.1464075E-1028.9812811
TGTAAGT255.176022E-428.9812811
ACAAGCT255.176022E-428.9812811
CTTAAGT304.421307E-528.981281
GCCTTAT601.8189894E-1128.981281
TGCTTCT200.006095749328.981281
AAAAGCT452.8392606E-828.981281
ACTTAAT200.006095749328.981281
TGCGATT304.421307E-528.981281
TAACACT304.421307E-528.981281
AGTCTAT200.006095749328.981281
Produced by FastQC (version 0.11.2)