FastQCFastQC Report
Tue 28 Nov 2017
SRR491350_ccRCC.fastq.gz.fasta.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR491350_ccRCC.fastq.gz.fasta.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3663413
Sequences flagged as poor quality0
Sequence length35
%GC64

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACGTTT200.00600889329.06652523
TAAAGTT353.7790978E-628.99913616
GTTTTGA255.1590387E-428.99754515
ATCTTGT2650.028.99754315
GCTATAA651.8189894E-1228.99714717
ATAGTTA651.8189894E-1228.99714717
CTAGACT304.4262873E-528.9764791
TCGCAGT255.1810296E-428.9764791
CTACTCT255.1810296E-428.9764791
CAACCTT200.006100673728.9764791
TAACGCT353.802168E-628.9764791
GACTTCT200.006100673728.9764791
GACTTAT353.802168E-628.9764791
AGAGTCT200.006100673728.9764791
CTACGAT403.2815478E-728.9764791
GAGAAAT200.006100673728.9764791
AGACCTT304.4262873E-528.9764791
CTCATAT200.006100673728.9764791
CATAAGT255.1810296E-428.9764791
CAGCTCT304.4262873E-528.9764791
Produced by FastQC (version 0.11.2)