FastQCFastQC Report
Wed 6 Dec 2017
SRR330912_NN.fastq.gz.fasta.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR330912_NN.fastq.gz.fasta.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11396558
Sequences flagged as poor quality0
Sequence length36
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGAGG200.00499011530.193121
TGAGGTA1282400.030.0542051
ATGTGCC352.8997492E-630.0030572
TATCGCC303.495618E-529.99739625
CCGCGTT303.4972938E-529.995293
ATCGCAG254.2363716E-429.9906857
ATCCTAC16750.029.988718
GGCACTT303.5030593E-529.98805212
CACACTA3550.029.98765819
TGTAAAC114050.029.9416181
TTCACAG113800.029.9145361
ATTGGTG554950.029.9007033
TCAGTGC66600.029.8984411
ACTGGAC65850.029.8950821
TCAACGC12250.029.8711576
TATAGTT691050.029.86910816
CAACGCT12250.029.8682737
GTCTACG23150.029.8670581
TAGTAGG965100.029.8599436
ATAGTTA656250.029.85592717
Produced by FastQC (version 0.11.2)