FastQCFastQC Report
Wed 6 Dec 2017
SRR330906_NN.fastq.gz.fasta.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR330906_NN.fastq.gz.fasta.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13603554
Sequences flagged as poor quality0
Sequence length36
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTACG21000.030.0937391
TATCGTT6600.029.98566816
AATGCGC254.2409328E-429.98522817
TGAGGTA1938900.029.932321
CCGTTAC186850.029.9202674
CGTTACC186500.029.9121075
TCAGTGC148350.029.9010261
CCATTAC186100.029.90023610
TACCCTG103350.029.8753531
CATTACT186450.029.86823511
TGTAAAC200050.029.845531
CCTACAC29950.029.83867310
ATCCTAC29950.029.8348318
TACCATT186850.029.8325548
TATAGTT947250.029.83055716
ATTACTG186950.029.82856612
ATAGTTA908300.029.82841717
TGAGATG1101450.029.8218841
TAGTAGG1487850.029.8202116
GTAGGTT1488300.029.808728
Produced by FastQC (version 0.11.2)