FastQCFastQC Report
Wed 6 Dec 2017
SRR330905_NN.fastq.gz.fasta.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR330905_NN.fastq.gz.fasta.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13062096
Sequences flagged as poor quality0
Sequence length36
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATACG254.164056E-430.0790041
AATCGTG303.5022033E-529.9891749
CAACGCT7600.029.9832067
CGTTACC229750.029.9169245
CCGTTAC230400.029.9039824
TACCATT229650.029.8677628
CCATTAC229350.029.85188110
TGAGGTA504900.029.8466661
CATTACT229650.029.83911
TAGGTTG357900.029.7964559
AGTAGGT358200.029.7948687
TAGTAGG358450.029.7939746
TTACTGA230400.029.79393413
GTAGGTT358800.029.7763468
ACCATTA230200.029.7611949
ATAGTTA177750.029.75605617
GTAGTAG506300.029.7482625
TATAGTT184000.029.74726716
ATTACTG230900.029.7422912
AGGTTGT357650.029.74181610
Produced by FastQC (version 0.11.2)