FastQCFastQC Report
Wed 6 Dec 2017
SRR330904_NN.fastq.gz.fasta.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR330904_NN.fastq.gz.fasta.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15579483
Sequences flagged as poor quality0
Sequence length36
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGAGGTA1866050.029.9523741
TCAGTGC152200.029.9470141
GTCTACG53200.029.8874511
CCGTTAC62450.029.8618534
TATAGTT960400.029.84040816
CGTTACC62350.029.8380015
TAGTAGG1398850.029.837686
AGTAGGT1399700.029.8345577
GTAGGTT1399450.029.8279888
ATAGTTA916400.029.82790417
TAGGTTG1394800.029.8269259
CAACGCT17400.029.8100457
AGGTTGT1402150.029.80102710
TGTATAG1287100.029.78779614
TTGTATA1299700.029.77702713
TCAAGTA100200.029.7756732
TTCACAG160200.029.7755151
GTAGTAG1869500.029.7593365
GAGGTAG1890300.029.757522
TGAGATG515950.029.741351
Produced by FastQC (version 0.11.2)