FastQCFastQC Report
Wed 6 Dec 2017
SRR330863_PP.fastq.gz.fasta.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR330863_PP.fastq.gz.fasta.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10890612
Sequences flagged as poor quality0
Sequence length36
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAACGCT7500.029.9318457
TCAACGC7450.029.9294996
TCAGTGC226700.029.9216791
TGAGGTA1530900.029.9079971
CCGTTAC37900.029.8905664
CGTTACC37750.029.851735
TAGCTTA684600.029.8302671
TGAGATG1207900.029.8225541
GAGGTAG1544650.029.7911512
TTCACAG185850.029.7691331
TGTAAAC150700.029.7686141
AAGTTCC81700.029.75154313
CTACAGA175700.029.7473349
GTTGACA403550.029.74037718
CCATTAC37600.029.73392910
CCCGACT51350.029.72947711
CCTACAC21850.029.7274610
ACTACAG175750.029.7212898
TGCACTA175600.029.7179555
CAGACTG686050.029.7143949
Produced by FastQC (version 0.11.2)