FastQCFastQC Report
Wed 6 Dec 2017
SRR330862_PP.fastq.gz.fasta.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR330862_PP.fastq.gz.fasta.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10450125
Sequences flagged as poor quality0
Sequence length36
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAGGTA254.178763E-430.0608371
TATAAAG254.240672E-429.985462
GATGCAC254.2434066E-429.9821627
GCGTGAC200.005164137629.9821625
CCGTTAC193050.029.9278054
CGTTACC192800.029.9277345
CCATTAC192900.029.90716710
TGAGGTA559700.029.8782271
ACTGAGT181550.029.85944715
ATTGGTG395600.029.846033
TACCATT193950.029.8290048
CATTACT193850.029.8147411
GTTGACA244200.029.81384318
TATAGTT320250.029.81378616
ACTGGAC72800.029.8130861
TCCTTCA53950.029.81011
ATAGTTA310800.029.80880517
ATGGGTG309850.029.8082753
TTACTGA193800.029.80667713
TAGCTTA401650.029.7839161
Produced by FastQC (version 0.11.2)