FastQCFastQC Report
Wed 6 Dec 2017
SRR330861_PP.fastq.gz.fasta.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR330861_PP.fastq.gz.fasta.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19748697
Sequences flagged as poor quality0
Sequence length36
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTAGCCG254.109226E-430.1472347
CGCTTAC200.005027889730.1466989
CGTTACC401650.030.1134595
CCGTTAC402350.030.1022034
TAGCTTA1806350.030.0368061
TACCATT403000.030.0157878
ACTGGAC283150.029.9950731
GTTACCA403350.029.9790656
CAGACTG1799000.029.9782839
TCAACGC17750.029.9773926
CAACGCT17700.029.9769137
TAGTAGG886750.029.9687486
TGAGGTA1454450.029.9670541
ATTGGTG764200.029.9629543
TAGGTTG888550.029.9567019
AGTAGGT889100.029.947187
GTAGGTT889400.029.9416288
AGATGCT7250.029.9393226
CTTATCA1803500.029.9298524
ACCGTTA405550.029.9196663
Produced by FastQC (version 0.11.2)