FastQCFastQC Report
Wed 6 Dec 2017
SRR330860_PP.fastq.gz.fasta.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR330860_PP.fastq.gz.fasta.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8289696
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTTATG750.030.0169941
GTCTACG28400.029.9641461
CAACGCT3900.029.9385997
CATGACA651.8189894E-1229.9385997
GCACGTA303.54263E-529.9385996
AAGGTCA303.54263E-529.9385994
TCGATAG1200.029.9385994
CGTTACC2400.029.9385995
GCGTGAC352.9486346E-629.9385995
CGCGTTG254.2796272E-429.9385994
CGATAGC1200.029.9385995
CCGTTAC2400.029.9385994
AGCACGT303.54263E-529.9385995
ACCTAGC850.029.9385976
ACCGCGT200.005201228429.9382342
TCTACGA200.005201228429.9382342
GTACCAG352.9490511E-629.93805514
TCGCACC352.9490511E-629.93805514
GCTTACC452.0711013E-829.93805510
ACTACCT2000.029.93805513
Produced by FastQC (version 0.11.2)