FastQCFastQC Report
Wed 6 Dec 2017
SRR330858_PP.fastq.gz.fasta.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR330858_PP.fastq.gz.fasta.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8341507
Sequences flagged as poor quality0
Sequence length36
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AACGTTC200.00505053930.11879523
CGTCCAA254.2152152E-430.0162098
ATACACG352.8906925E-630.0149387
AAGTTCC47800.029.99514413
CCGCTTA254.2572131E-429.96544818
TTGCGTA200.00517817529.96544818
TACCAGT2950.029.96363615
TCACAAC200.005235148629.8984574
CGACTGG74550.029.88776213
CTATACA750.029.8809911
CTATTAG200.00525925329.87037722
CAGACTG714150.029.859079
TCAGTGC150450.029.8511981
TTGTGTG108400.029.83974813
CTACAGA117550.029.835849
GTTGACA390800.029.81592818
TGTTGAC427900.029.80940417
CTGATGT714950.029.80127713
AGTAGAT419600.029.7967647
TATAGTT742600.029.79398716
Produced by FastQC (version 0.11.2)