FastQCFastQC Report
Wed 6 Dec 2017
SRR837506.fastq.fasta.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR837506.fastq.fasta.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24410969
Sequences flagged as poor quality0
Sequence length50
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AACCGCC207.848127E-444.0130731
TTTCCAT1600.044.0130731
GTTAATT254.4377084E-544.0130731
ATTGGGG254.4377084E-544.0130731
TTTGCTT27550.044.0130731
CTTTCCA207.848127E-444.0130731
TTTTAAT207.848127E-444.0130731
TACGGGA207.854702E-444.005592
CTTTTTA207.8598544E-443.99973341
TTTTTTA254.445658E-543.9997341
TTGTTTA302.5299378E-643.9997341
TTTTTAT207.8599335E-443.9996442
TTTTTAC254.4457116E-543.9996442
TCGTAAA351.4481157E-743.9983833
ATCCCCC3450.043.9977538
AATTTAG351.4482794E-743.99774638
AGTTAAT351.4482794E-743.99774638
CATTAAT254.4468943E-543.99765839
AATTATT254.4468943E-543.99765839
CTTTAGG502.7284841E-1143.99765839
Produced by FastQC (version 0.11.2)