FastQCFastQC Report
Wed 6 Dec 2017
SRR837504.fastq.fasta.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR837504.fastq.fasta.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24538176
Sequences flagged as poor quality0
Sequence length50
%GC55

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAACCGC3000.044.118661
AACCTTC2300.044.118661
TAAGGGG1500.044.118661
AAAGCGT4250.044.118661
TTAGGTA1450.044.1186561
TTAGGGG5700.044.1186561
CCCCTAA3900.044.1186561
CAACGGG207.7560707E-444.1186561
TTTCCTT2400.044.1186561
AAAACCG254.3753847E-544.1186561
TATTGCC207.7560707E-444.1186561
TTCGATT207.7560707E-444.1186561
CCCATCA502.7284841E-1144.1186561
TTTAATT1700.044.1186521
CCTTAAA950.044.021682
TTGCTTC1200.044.021682
AAAAGTT207.8405766E-444.021682
CCGTAAA551.8189894E-1244.021682
TTCCACA207.8405766E-444.021682
ATCATTC2250.044.021682
Produced by FastQC (version 0.11.2)