Basic Statistics
Measure | Value |
---|---|
Filename | SRR837498.fastq.fasta.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8001605 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 57 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCCTGTACTGAGCTGCCCCGATGGAATTCTCGGGGGCCAAGGAACTCCAG | 31623 | 0.3952082113525974 | RNA PCR Primer, Index 1 (96% over 29bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGCGTTC | 50 | 2.7284841E-11 | 44.073048 | 23 |
CCGCTGA | 80 | 0.0 | 44.073044 | 27 |
CAATCTC | 45 | 4.7293724E-10 | 44.073044 | 25 |
GGTTTTC | 35 | 1.4287798E-7 | 44.073044 | 25 |
GTTTTCT | 35 | 1.4287798E-7 | 44.073044 | 26 |
CATTTCT | 20 | 7.795362E-4 | 44.073044 | 25 |
TATTCGG | 20 | 7.795362E-4 | 44.073044 | 27 |
TGTGGTA | 30 | 2.5009085E-6 | 44.073044 | 22 |
AATATTC | 20 | 7.795362E-4 | 44.073044 | 25 |
ATTTCGC | 20 | 7.795362E-4 | 44.073044 | 27 |
CTCAATT | 20 | 7.795362E-4 | 44.073044 | 26 |
TGGCCTT | 20 | 7.795362E-4 | 44.073044 | 22 |
CGTTCTC | 45 | 4.7293724E-10 | 44.073044 | 25 |
GCAATCT | 45 | 4.7293724E-10 | 44.07277 | 24 |
GCGTTCT | 45 | 4.7293724E-10 | 44.07277 | 24 |
GTACTTA | 2360 | 0.0 | 44.015163 | 5 |
TACTTAG | 2360 | 0.0 | 44.015163 | 6 |
CAATGTT | 45 | 4.783942E-10 | 44.01516 | 6 |
GTTTGTC | 100 | 0.0 | 44.01516 | 6 |
TGCATCA | 25 | 4.436198E-5 | 44.01516 | 5 |