SRR837481.fastq.fasta.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR837481.fastq.fasta.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17347475
Sequences flagged as poor quality	0
Sequence length	50
%GC	57

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACACAGTGATCTCGTATGC	484022	2.7901582218737886	RNA PCR Primer, Index 5 (100% over 50bp)
TCCTGTACTGAGCTGCCCCGATGGAATTCTCGGGGGCCAAGGAACTCCAG	67833	0.39102520683845915	RNA PCR Primer, Index 1 (96% over 29bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTTC	20	6.986737E-4	45.064278	1
GTCTACG	455	0.0	45.064278	1
TATTGCG	20	6.986737E-4	45.064278	1
TTATTGC	160	0.0	45.064278	1
CCTTGCA	20	6.986737E-4	45.064278	1
ATTCTAA	40	6.7393557E-9	45.064278	1
TATTTCA	50	2.1827873E-11	45.064274	1
TCTTGCA	550	0.0	45.064274	1
GGATATC	115	0.0	45.064274	1
TAACGGA	25	3.8604107E-5	45.064274	1
TATTGTA	45	3.8016879E-10	45.064274	1
TCGTGTA	250	0.0	45.064274	1
CGCTCGG	25	3.8604107E-5	45.064274	1
TGTCTTA	45	3.8016879E-10	45.064274	1
AATGACA	205	0.0	45.064274	1
TATTACA	35	1.1997145E-7	45.064274	1
TCCGTAC	35	1.1997145E-7	45.064274	1
TATAGCA	25	3.8604107E-5	45.064274	1
TTTTGCA	25	3.8604107E-5	45.064274	1
AGAGGTA	65	0.0	45.064274	1