FastQCFastQC Report
Wed 6 Dec 2017
SRR837457.fastq.fasta.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR837457.fastq.fasta.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20395792
Sequences flagged as poor quality0
Sequence length50
%GC55

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTAGGTA650.044.1537781
TTCAGTA351.4085344E-744.1537781
TTTCGTT302.4698002E-644.1537781
TCCCTGA700.044.1537781
TTTCCTA302.4698002E-644.1537781
AATGGCG302.4698002E-644.1537781
AAACCGG302.4698002E-644.1537781
CCCTTAA302.4698002E-644.1537781
TAAGATT600.044.1537781
CCCATCA351.4085344E-744.1537781
AAAGCGT302.4698002E-644.1537781
CACCCCG351.4085344E-744.1537781
TATCCTT1200.044.1537781
TATTTCA454.638423E-1044.1537741
TTAGGGG3000.044.1537741
TCGTTTC408.070856E-944.1537741
TCATTTA1350.044.1537741
CAACCGT454.638423E-1044.1537741
TTCAATT408.070856E-944.1537741
TATGCTT3250.044.1537741
Produced by FastQC (version 0.11.2)