FastQCFastQC Report
Wed 6 Dec 2017
SRR837454.fastq.fasta.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR837454.fastq.fasta.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15227986
Sequences flagged as poor quality0
Sequence length50
%GC55

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTTTC900.044.116051
CTATACG302.4843303E-644.116051
TTCCGTA2850.044.116051
AAAACGT750.044.116051
TTTCATT15850.044.116051
CCCTTCA254.376833E-544.116051
TTTGCTT850.044.116051
TAAGGGG302.4843303E-644.116051
CTTTCAG254.376833E-544.116051
TCCCCTT254.376833E-544.116051
TTATTGC1850.044.116051
TGTAAAC7700.044.116051
AAAGCGT750.044.116051
TTAGGTA650.044.1160471
AACAATT207.7582337E-444.1160471
TTAGGGG650.044.1160471
TCTTCTT408.132702E-944.1160471
TTCAAGT2300.044.1160471
TTTCCTT1600.044.1160471
AAACCGA650.044.1160471
Produced by FastQC (version 0.11.2)