FastQCFastQC Report
Wed 6 Dec 2017
SRR837453.fastq.fasta.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR837453.fastq.fasta.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16815224
Sequences flagged as poor quality0
Sequence length50
%GC55

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATTTCA207.7617605E-444.1120071
TTAGGTA750.044.1120071
TCCGCTT454.6929927E-1044.1120071
TATGCTT2000.044.1120071
TAACGGA207.7617605E-444.1120071
TTTCCAC254.379222E-544.1120071
TCCTAGA207.7617605E-444.1120071
AAAAAGT207.7617605E-444.1120071
AAACCGA207.7617605E-444.1120071
TTGAATG207.7617605E-444.1120071
TCCAATA254.379222E-544.1120071
CCCTTGA207.7617605E-444.1120071
AACCTTC800.044.1120071
TAAGCTT207.7617605E-444.1120071
TTACATT254.379222E-544.1120071
TTATTGC750.044.1120071
TAAGATT454.6929927E-1044.1120071
AAAGCGT750.044.1120071
TCGAAAC254.379222E-544.1120071
CAACGGC351.41903E-744.1120031
Produced by FastQC (version 0.11.2)