FastQCFastQC Report
Wed 6 Dec 2017
SRR837450.fastq.fasta.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR837450.fastq.fasta.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20381239
Sequences flagged as poor quality0
Sequence length50
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTCAAC551.8189894E-1244.4726831
CAAAACG302.3504617E-644.4726831
CTTCCCT351.3310637E-744.4726831
CATGCCT1200.044.4726831
GGATATC700.044.4726831
TCAGGGG351.3310637E-744.4726831
AAACGGA302.3504617E-644.4726831
AAACGAG351.3310637E-744.4726831
TGTCTTA551.8189894E-1244.4726831
TCATGTA1350.044.4726831
TAGCTTA1100.044.4726831
CCTTGCA700.044.4726831
TATCCTT1850.044.4726831
AAATCGT407.574272E-944.472681
CAACGTG454.3291948E-1044.472681
CAACGTA407.574272E-944.472681
TTTAAAC1300.044.472681
CTATACG750.044.472681
TCTTACG407.574272E-944.472681
TAACCGT207.456678E-444.472681
Produced by FastQC (version 0.11.2)